PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010633m
Common NameEUTSA_v10010633mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 271aa    MW: 31114.4 Da    PI: 4.5669
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010633mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22e-2013100196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+   + ++s  +++p +f e+ + +   ++t +l  + g  W+v +  +k+++r+++t+GW++F+++++Lk+g+f++F +dg ++f   v
  Thhalv10010633m  13 FFKVF--LSETSSESMRIPVSFNEHLEDP--LPRTAKLHGTGGGIWTVGF--TKRRKRVYFTDGWSKFAEDHDLKDGEFLTFVYDGYHTF--EV 98 
                      89999..777777779******9655655..899****************..********************************998888..55 PP

                      EE CS
               B3  95 kv 96 
                      +v
  Thhalv10010633m  99 SV 100
                      55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-2310102IPR015300DNA-binding pseudobarrel domain
CDDcd100176.17E-2111102No hitNo description
SuperFamilySSF1019361.02E-2311102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59211104IPR003340B3 DNA binding domain
SMARTSM010192.2E-2213104IPR003340B3 DNA binding domain
PfamPF023626.1E-171399IPR003340B3 DNA binding domain
PROSITE profilePS508636.682175270IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-8176259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-11177258IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.024179267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSETEDDAVL PRFFKVFLSE TSSESMRIPV SFNEHLEDPL PRTAKLHGTG GGIWTVGFTK  60
RRKRVYFTDG WSKFAEDHDL KDGEFLTFVY DGYHTFEVSV YDGLGCKETR AVTEAVELSD  120
ADSDSDEEEE EDPSVKGEDD SSYAEDEEVS QSNYTVDSEG TESDSSDISD LVVTTNPWFK  180
TNLKNRTYEL LIPAKLAREY RLKFGESITY IDEEGTMVGI RVRWSDDRIC FKGWDRICRR  240
NRLNKQDQVI CEMLHNRKLV HTIKIHIKRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-201210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403705.10.0hypothetical protein EUTSA_v10010633mg
SwissprotQ8LAV52e-94REM20_ARATH; B3 domain-containing protein REM20
TrEMBLV4LZ340.0V4LZ34_EUTSA; Uncharacterized protein
STRINGBra003130.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-85B3 family protein